秦源，女，博士，博士生导师，williamhill官网经理，中英人才项目“牛顿高级学者基金”获得者，福建省“百人计划”，福建省高校青年拔尖人才，福建省“闽江学者”特聘教授，广西壮族自治区特聘专家，获福建省自然科学二等奖（排名第1）、福建青年科技奖，福建运盛青年科技奖，福建青年五四奖章，福建省三八红旗手，福建省最美女科技工作者。2001年获得武汉大学药学学士学位，2006年获得武汉大学发育生物学博士学位，2006-2009年在美国亚利桑那大学植物系进行博士后研究，2009-2014年任职于中国科学院上海生命科学研究院植物生理生态研究所副研究员，2014年至今任英国威廉希尔公司教授。先后主持“国家自然科学国际合作项目”、“国家自然科学基金海峡联合基金重点项目”、“国家自然科学优秀青年科学基金项目”、“国家自然科学基金面上项目”等国家省部级项目十多项。在植物生殖发育领域有系统的研究，发表书籍（章节）3本，相关论文100余篇，其中以第一作者或（并列）通讯作者身份在国际期刊PNAS, Current Biology, Plant Cell, Molecular Plant,New Phytologist, PLoS Genetics, Plant Physiology, Plant Journal等发表SCI收录论文90余篇。任《Tropical Plants》副主编，《热带生物学报》副主编，《Physiologia Plantarum》，《亚热带植物科学》编委，中国植物学会细胞生物学专业委员会委员，国家自然科学基金二审专家、国家“青年千人”计划会评专家、广西科学技术奖会评专家，福建省遗传学会青年委员会主任，福建省植物学会理事等。培养研究生获得省优秀博士学位论文3篇和省优秀硕士学位论文2篇。
个人信息：
姓名： 秦源 性别： 女 民族： 汉
出生日期：1979.9.27
联系方式： (Email): yuanqin@foxmail.com
办公室: 0591-8359-5382
手机: 17720750046
实验室网页http://www.qinlab.net
个人简历：
1997.9-2001.7武汉大学威廉希尔 药学 学士
2001.9-2006.7 武汉大学威廉希尔 发育生物学博士
2006.7-2009.7 美国亚利桑那大学 植物系 博士后
2009.8-2014.5 中科院上海植物生理生态研究所副研究员
2015.8-2016.2美国加州大学河滨分校访问学者
2014.6-至今 英国威廉希尔公司 基因组与生物技术研究中心 教授
研究方向：
1.植物雌配子体发育的分子机理。
2.植物抗逆的分子调控。
承担项目清单：
申请人主持或参加科研项目（课题）及人才计划项目情况:
1、国家自然科学基金面上项目，32270366，拟南芥大孢子母细胞优势表达基因MEG1调控大孢子母细胞特化机理研究，2023/1-2026/12，55.00万元，在研，主持。
2、横向项目-深圳市百果种业有限公司，KH230046A，百香果的品种研究和育种研发技术服务合作，2023/1-2027/1，75.00万元，在研，主持。
3、广西科技重大专项子课题，桂科AA22068096-3, 菠萝鲜食优良新品种选育与高效栽培技术示范应用，2022/4-2025/3，60.00万元，在研，主持。
4、国家自然科学基金面上项目，31970333，拟南芥MADS-box转录因子AGLs调控珠被和雌配子体协同发育，2020/1-2023/12，58.00万元，在研，主持。
5、国家自然科学基金委员会与英国皇家学会联合资助的中英人才项目牛顿高级学者基金，31761130074，染色质重塑复合物SWR1通过调节miR398表达调控胚珠发育研究，2017/3-2020/2，11万英镑+42万人民币，已结题，主持。
6、国家自然科学基金海峡联合基金重点项目，U1605212，菠萝雌配子体发育及演化研究，2017/1-2020/12，216万，已结题，主持。
7、福建省百人计划，660160050，植物生殖发育机理研究，2017/1-2019/12，100万，已结题，主持。
8、福建省科技计划高校产学研合作项目，2019N5008，凤梨科植物高效繁殖技术研发和新品种创制及产业化，2019/7-2022/6，40万，已结题，主持。
9、福建省高校领军人才，660160130,植物雌配子体发育研究，2018/1-2020/12，70万，已结题，主持。
10、国家自然科学基金面上项目，31470284，拟南芥三个转录因子STF1/2/3介导体细胞调控雌配子体发育的分子机理，2015/1-2018/12，85万，已结题，主持。
11、福建省教育厅新世纪人才项目，JA14096，染色质重塑复合物SWR1调控花瓣发育的分子机理，2014/8-2016/7，5万，已结题，主持。
12、杂交水稻国家重点实验室（武汉大学）开放课题，KF201306，水稻柱头与花粉识别机理的蛋白质组学研究，2013/1-2013/12，5万，已结题，主持。
13、国家自然科学基金面上项目，31170290，拟南芥染色质重组复合物SWR1成员ARP6调控植物大孢子发生的分子机理及信号网络研究，2012/1-2015/12，65万，已结题，主持。
14、国家重大科学研究发展计划子课题，2011CB944600，植物减数分裂过程中染色体相互作用的分子机理，2011/1-2015/8，91万，已结题，主持。
15、国家重点基础研究发展计划子课题，2012CB944800，植物胚乳发育及储藏物质累积的分子调控机制研究，2012/1-2016/8，90万，已结题，主持。
16、中科院创新工程青年创新促进会项目，Y119Z61B11，雌配子体发育的基因网络，2011/1-2014/12，40万，已结题，主持。
已发表论文：
通讯作者论文
2023
1. Cai H, Huang Y, Liu L, Zhang M, Chai M, Xi X, Aslam M, Wang L, Ma S, Su H, Liu K, Tian Y, Zhu W, Qi J, Dresselhaus T, QinY*. (2023) Signaling by the EPFL-ERECTA family coordinates female germline specification through the BZR1 family in Arabidopsis. Plant Cell, doi:10.1093/plcell/koad032 (IF=11.3, 一区)
2. QinY*, Cai H*. (2023) Epigenetic regulation of female germline development through ERECTA signaling pathway. New Phytologist.
3. Cai H, QinY*. (2023) Insights into the role of phytohormones in plant female germline cell specification. Current Opinion in Plant Biology.
4. Cheng Y, QinY*. (2023) Chromosome-scale genome sequence of Suaeda glauca sheds light on salt stress tolerance in halophytes. Horticulture Research.
5. Mohammadi MA, Wai MH, Rizwan HM, Qarluq AQ, Xu M, Wang L, Cheng Y, Aslam M, Zheng P, Wang X, Zhang W, Qin Y*. (2023) Advances in micropropagation, somatic embryogenesis, somatic hybridizations, genetic transformation and cryopreservation for Passiflora improvement. Plant Methods. 19(1):50. doi: 10.1186/s13007-023-01030-0.
6.安昌，陆琳，叶康卓，陈盛圳，王炳锐，郑平，秦源*。(2023) 药用植物鳄嘴花(忧遁草)的研究概况及质量标志物预测分析．中华中医药学刊. https://kns.cnki.net/kcms2/detail/21.1546.R.20230613.0909.002.html
7.张文斌，叶金巧，吴胜芳，王小媚，郑振江，郑平，王路路，秦源*。(2023)抗茎基腐病百香果新品种福砧1号的选育。中国果树，2023（7）：91-95. DOI:10.16626/j.cnki.issn1000-8047.2023.07.018
8. Zhang Y, Ye T, She Z, Huang S, Wang L, Aslam M, Qin R, Wang X, Qin Y*, Niu X*. (2023) Small Auxin Up RNA (SAUR) gene family identification and functional genes exploration during the floral organ and fruit developmental stages in pineapple (Ananas comosus L.) and its response to salinity and drought stresses. Int J Biol Macromol.237:124061. doi: 10.1016/j.ijbiomac.2023.124061.
9. Ye K, Dong C, Hu B, Yuan J, Sun J, Li Z, Deng F, Fakher B, Wang L, Pan C, Aslam M, Qin Y*,Cheng Y*. (2023) The genome size, chromosome number and the seed adaption to long-distance dispersal of Ipomoea pes-caprae (L.). Front Plant Sci.14:1074935. doi: 10.3389/fpls.2023.1074935.
10. Wang Y, Xu J, Hu B, Dong C, Sun J, Li Z, Ye K, Deng F, Wang L, Aslam M, Lv W, Qin Y*, Cheng Y*. (2023) Assembly, annotation, and comparative analysis of Ipomoea chloroplast genomes provide insights into the parasitic characteristics of Cuscuta species. Front Plant Sci.13:1074697. doi: 10.3389/fpls.2022.1074697.
2022
11. Cai H, Liu L, Huang Y, Zhu W, Qi J, Xi X, Aslam M, Dresselhaus T, QinY*. (2022) Brassinosteroid signaling regulates female germline specification in Arabidopsis. Current Biology.32(5):1102-1114.e5. doi: 10.1016/j.cub.2022.01.022. (IF=10.900, 一区)
12. Cai H, Ma S, Su H, Liu K, Aslam M, QinY*. (2022) Positional signals establishment in the regulation of female germline specification. Seed Biology. 1:6. https://doi.org/10.48130/SeedBio-2022-0006
13. Liu Y, Priyadarshani SVGN, Chi M, Yan M, Mohammadi MA, Zhang M, Zhou Q, Wang L, Luo T, Wai MH, Wang X, Cai H, Wang H*, Qin Y*. (2022) Epigenetic modification mechanisms of chloroplasts mutants in pineapple leaves during somatic regeneration, Horticultural Plant Journal, https://doi.org/10.1016/j.hpj.2022.12.012.
14. Fakher B, Jakada BH, Greaves JG, Wang L, Niu X, Cheng Y, Zheng P, Aslam M, Qin Y*, Wang X*. (2022) Identification and expression analysis of pineapple sugar transporters reveal their role in the development and environmental response. Frontiers in Plant Science. Oct 24;13:964897. doi: 10.3389/fpls.2022.964897.
15. Aslam M, Fakher B, QinY*. (2022) Big Role of Small RNAs in Female Gametophyte Development. International Journal of Molecular Sciences.2022 Feb 10;23(4):1979. doi: 10.3390/ijms23041979. (IF=6.208, 二区)
16. Aslam M, She Z, Jakada BH, Fakher B, Greaves JG, Yan M, Chen Y, Zheng P, Cheng Y, QinY*. (2022) Interspecific complementation-restoration of phenotype in Arabidopsis cuc2cuc3 mutant by sugarcane CUC2 gene. BMC Plant Biology. 2022 Jan 22;22(1):47. doi: 10.1186/s12870-022-03440-z. (IF=5.260，二区)
17. Aslam M, Fakher B, Greaves J, Jakada B, Qin R, Qin Y*. (2022) A CBL-interacting protein kinase, AcCIPK18, from Ananas comosus regulates tolerance to salt, drought, heat stress and Sclerotinia sclerotiorum infection in Arabidopsis. Environmental and Experimental Botany. doi:https://doi.org/10.1016/j.envexpbot.2021.104728（IF=5.5，二区）
18. Aslam M, Fakher B, Ashraf MA, Cheng Y, Wang B*, Qin Y*. (2022) Plant Low-Temperature Stress: Signaling and Response. Agronomy,12, 702. https://doi.org/10.3390/agronomy12030702
19. Guo M, Zhang W, Mohammadi MA, He Z, She Z, Yan M, Shi C, Lin L, Wang A, Liu J, Tian D, Zhao H, Qin Y*. (2022) OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice. Frontiers in Plant Science. doi:10.3389/fpls.2022.873993. (IF=6.627, 二区)
20. Guo M, Zhao H, He Z, Zhang W, She Z, Mohammadi MA, Shi C, Yan M, Tian D, QinY*. (2022) Comparative Expression Profiling of Snf2 Family Genes During Reproductive Development and Stress Responses in Rice. Frontiers in Plant Science. doi: 10.3389/fpls.2022.910663. (IF=6.627, 二区)
21. Ye L, Cao L, Zhao X, Guo X, Ye K, Jiao S, Wang Y, He X, Dong C, Hu B, Deng F, Zhao H, Zheng P, Aslam M, QinY*, Cheng Y*. (2022) Investigation of the JASMONATE ZIM-DOMAIN Gene Family Reveals the Canonical JA-Signaling Pathway in Pineapple. Biology (Basel).2022 Mar 15;11(3):445. doi: 10.3390/biology11030445. (IF=5.079, 二区)
22. She Z, Huang Y, Aslam M, Wang L, Yan M, Qin R, Chen Y, Qin Y*, Niu X*. (2022) Expression characterization and cross‑species complementation uncover the functional conservation of YABBY genes for leaf abaxial polarity and carpel polarity establishment in Saccharum spontaneum. BMC Plant Biology.22:124 https://doi.org/10.1186/s12870-022-03501-3
23. Liu, Y.; Yuan, J.; Zhang, D.;Deng, K.; Chai, G.; Huang, Y.; Ma, S.; Qin, Y.*; Wang, L*. (2022) Genome-Wide Identification and Characterization of the SBP Gene Family in Passion Fruit (Passiflora edulis Sims). Int. J. Mol. Sci.23, 14153. https://doi.org/10.3390/ijms232214153 (IF=6.208, 二区)
2021
24. Cai H, Liu L, Zhang M, Chai M, Huang Y, Chen F, Yan M, Su Z, Henderson I, Palanivelu R, Chen X, QinY*. (2021) Spatiotemporal control of miR398 biogenesis via chromatin remodeling and kinase signaling ensures proper ovule development. Plant Cell, 33(5):1530-1553. doi: 10.1093/plcell/koab056 (IF=11.3, 一区)
25. Cai H, Huang Y, Chen F, Liu L, Chai M, Zhang M, Yan M, Aslam M, He Q, QinY*. (2021) ERECTA signaling regulates plant immune responses via chromatin-mediated promotion of WRKY33 binding to target genes. New Phytologist.230(2):737-756. DOI:10.1111/NPH.17200 (IF=10.2, 一区)
26. Cai H, Chai M, Chen F, Huang Y, Zhang M, He Q, Liu L, Yan M, QinY*. (2021) HBI1 acts downstream of ERECTA and SWR1 in regulating inflorescence architecture through the activation of the brassinosteroid and auxin signaling pathways. New Phytologist229(1):414-428 (IF=10.2, 一区)
27. Zhao L, Liu L, Liu Y, Dou X, Cai H, Aslam M, Hou Z, Jin X, Li Y, Wang L, Zhao H, Wang X, Sicard A, QinY*. (2021) Characterization of germline development and identification of genes associated with germline specification in pineapple. Horticulture Research.8(1):239. doi: 10.1038/s41438-021-00669-x. (IF=6.8, 一区)
28. Hou Z, Liu Y, Zhang M, Zhao L, Jin X, Liu L, Su Z, Cai H, Qin Y*. (2021) High-throughput single-cell transcriptomics reveals the female germline differentiation trajectory in Arabidopsis thaliana. Communications Biology. 4(1):1149. doi: 10.1038/s42003-021-02676-z. (IF=6.2, 一区)
29. Zhang M, Liu Y, Li Z, She Z, Chai M, He Q, Huang Y, Chen F, Wang B*, Cai H*, QinY*. (2021) The bZIP transcription factor GmbZIP15 facilitates resistance against Sclerotinia sclerotiorum and Phytophthora sojae infection in soybean. iScience24, 102642（IF=5.5，二区）
30. Cheng Y, He X, Priyadarshani SVGN, Wang Y, Ye Li, Ye K, Zhou Q, Luo Z, Deng F, Cao L, Zheng P, Aslam M, QinY*. (2021) Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca. BMC Genomics, 22:167 （IF=4，二区）
31. Aslam M, Huang X, Yan M, She Z, Lu X, Fakher B, Chen Y, Li G*, Qin Y*. (2021) TRM61 is essential for Arabidopsis embryo and endosperm development. Plant Reproduction. Aug 18. doi: 10.1007/s00497-021-00428-x. （IF=3.8，二区）
32. Cheng Y, Zhou Q, Li W, Cheng H, Mohammadi M, Liu Y, Deng F, S.V.G.N. Priyadarshani, Sun J, Ye L, He X, Cao L, Cao S, Zheng P, Aslam M, Zhao H, QinY*. (2021) De novo transcriptome assembly and gene expression profiling of Ipomoea pes-caprae L. under heat and cold stresses. Scientia Horticulturae,289,110379 （IF=3.5，二区）
33. Mohammadi MA, Cheng Y, Aslam M, Jakada BH, Wai MH, Ye K, He X, Luo T, Ye L, Dong C, Hu B, Priyadarshani SVGN, Wang-Pruski G*, QinY*. (2021) ROS and Oxidative Response Systems in Plants Under Biotic and Abiotic Stresses: Revisiting the Crucial Role of Phosphite Triggered Plants Defense Response. Frontiers in Microbiology.12:631318. doi: 10.3389/fmicb.2021.631318. （IF=5.6，二区）
34. Wang L, Liu Y, Aslam M, Jakada B, QinY*, Cai H*. (2021) The Glycine-Rich Domain Protein GRDP2 Regulates Ovule Development via the Auxin Pathway in Arabidopsis. Frontiers in Plant Science. doi: 10.3389/fpls.2021.698487 (IF=5.8, 二区)
35. Shi Y, Zhang X, Chang X, Yan M, Zhao H, QinY*, Wang H*. (2021) Integrated analysis of DNA methylome and transcriptome reveals epigenetic regulation of CAM photosynthesis in pineapple. BMC Plant Biol.6; 21(1):19. doi: 10.1186/s12870-020-02814-5. （IF=4.2，二区）
36. Liu Y., Aslam M., Yao L., Zhang M., Wang L., Chen H., Huang Y., Qin Y*, Niu X.* (2021) Genomic analysis of SBP gene family in Saccharum spontaneum reveals their association with vegetative and reproductive development. BMC Genomics. 22(1):767. doi: 10.1186/s12864-021-08090-3. (IF=4.0929, 二区)
37. Li D, Mohammadi M, QinY*, Zhang Z*. (2021) Somatic Embryogenesis and Indirect In Vitro Plant Regeneration in Amorphophallus konjac K. Koch by One-Step Seedling Formation. Horticulturae.7, 497. https://doi.org/10.3390/ horticulturae7110497 （IF=2.3，二区）
38. Jin X, Liu Y, Hou Z, Zhang Y, Fang Y, Huang Y, Cai H, QinY*, Cheng Y*. (2021) Genome-Wide Investigation of SBT Family Genes in Pineapple and Functional Analysis of AcoSBT1.12 in Floral Transition. Frontiers in Genetics.12: 730821. doi: 10.3389/fgene.2021.730821 （IF=4.6，三区）
39. Zhao H, Maokai Y, Cheng H, Guo M, Liu Y, Wang L, Chao S, Zhang M, Lai L, QinY*. (2021) Characterization of auxin transporter AUX, PIN and PILS gene families in pineapple and evaluation of expression profiles during reproductive development and under abiotic stresses. PeerJ. 9:e11410. doi: 10.7717/peerj.11410. （IF=3，三区）
40. Wang L, Liu Y, Chai M, Chen H, Aslam M, Niu X, QinY*, Cai H*. (2021) Genome-wide identification, classification, and expression analysis of the HSF gene family in pineapple (Ananas comosus). PeerJ.9:e11329. doi: 10.7717/peerj.11329. （IF=3，三区）
41. Yan M., Jin X., Liu Y., Chen H., Ye T., Hou Z., Su Z., Chen Y., Aslam M., Qin Y*., and Niu X.* (2021) Identification and evaluation of the novel genes for transcript normalization during female gametophyte development in sugarcane. Peer J. DOI 10.7717/peerj.12298. (IF=2.8098, 三区)
42. Jiang X, Mohammadi M, QinY*, Zhang Z*. (2021) Towards Understanding the Involvement of H+-ATPase in Programmed Cell Death of Psammosilene tunicoides after Oxalic Acid Application. Molecules.26,6957. https://doi.org/10.3390/molecules26226957 （IF=4.4，三区）
43. Zhou Q, Liu L, Cheng H, Li Z, Wai M, Luo T, Jin X, Zhao H, Priyadarshani SVGN*, QinY*. (2021) Genome‑wide Identification and Expression Pattern Analysis of the HD‑Zip Transcription Factor Family in Pineapple (Ananas Comosus). Tropical Plant Biology. 14:120–131 (IF=1.5, 四区)
44.李占杰，秦源。染色质可及性与植物基因表达调控。植物学报 2021, 56 (6): 664–675
2020
45. Su Z, Wang N, Hou Z, Li B, Li D, Liu Y, Cai H, QinY*, Chen X*. (2020) Regulation of Female Germline Specification via Small RNA Mobility in Arabidopsis. Plant Cell, 32(9):2842-2854 , doi:10.1105/tpc.20.00126 (IF=9.6, 一区)
46. Zhao H, Guo M, Yan M, Cheng Y, Liu Y, She Z, Lai L, Shi C, Zhang M, Li Y, Lin D, QinY*. (2020) Comparative expression profiling reveals genes involved in megasporogenesis. Plant Physiology. 182: 2006-2024 (IF=6.9, 一区)
47. Liu L, Zhao L, Chen P, Cai H, Hou Z, Jin X, Aslam M, Chai M, Lai L, He Q, Liu Y, Huang X, Chen Hui, Chen Y, QinY*. (2020). ATP binding cassette transporters ABCG1 and ABCG16 affect reproductive development via auxin signalling in Arabidopsis. The Plant Journal. 102, 1172–1186. (IF=5.6, 一区)
48. Wang L, Li Y, Jin X, Liu L, Dai X, Liu Y, Zhao L, Zheng P, Wang X, Liu Y, Lin D, QinY*. (2020). Floral transcriptomes reveal gene networks in pineapple floral growth and fruit development. Communications Biology.3:500 doi.org/10.1038/s42003-020-01235-2
49. Aslam M, Jakada B, Fakher B, Greaves J, Niu X, Su Z, Cheng Y, Cao S, Wang X*, QinY* (2020). Genome-wide study of pineapple (Ananas comosus L.) bHLH transcription factors indicates that cryptochrome-interacting bHLH2 (AcCIB2) participates in flowering time regulation and abiotic stress response. BMC Genomics.22;21(1):735. DOI: 10.1186/s12864-020-07152-2
50. Zhang M, Liu Y, He Q, Chai M, Huang Y, Chen F, Wang X, Liu Y, Cai H*, Qin Y*. (2020). Genome-wide investigation of calcium-dependent protein kinase gene family in pineapple: evolution and expression profiles during development and stress. BMC Genomics.23;21(1):72. doi: 10.1186/s12864-020-6501-8.
51. Chen H, Lai L, Li L, Jakada B, Huang Y, He Q, Chai M, Niu X*, QinY*. (2020). AcoMYB4, an Ananas comosus L. MYB transcription factor, functions in osmotic stress through negative regulation of ABA signaling. International Journal of Molecular Sciences.21, 5727; doi:10.3390/ijms21165727
52. Zhang M, Liu Y, Cai H, Guo M, Chai M, She Z, Ye L, Cheng Y, Wang B*, Qin Y*. (2020). The bZIP Transcription Factor GmbZIP15 Negatively Regulates Salt- and Drought-Stress Responses in Soybean.International Journal of Molecular Sciences.21(20):7778. doi: 10.3390/ijms21207778.
53. He Q, Cai M, Bai M, Zhang M, Chen F, Huang Y, Priyadarshani SVGN, Chai M, Liu L, Chen H, QinY*. (2020). A Soybean bZIP Transcription Factor GmbZIP19 Confers Multiple Biotic and Abiotic Stress Responses in Plant. International Journal of Molecular Sciences.21, 4701; doi:10.3390/ijms21134701
54. Huang Y, QinY*. (2020) Genome-wide identification and expression analysis of the ERF transcription factor family in pineapple (Ananas comosus (L.) Merr.). Peer J. 8:e10014 doi.org/10.7717/peerj.10014
55. Chai M, Cheng H, Yan M, Priyadarshani SVGN, Zhang M, He Q, Huang Y, Chen F, Liu L, Huang X, Lai L, Chen H, Cai H, QinY*. (2020) Identification and expression analysis of the DREB transcription factor family in pineapple (Ananas comosus (L.) Merr.). Peer J.8: e9006 DOI 10.7717/peerj.9006
56. Liu Y, Chai M, Zhang M, He Q, Su Z, Priyadarshani SVGN, Liu L, Dong G, QinY*. (2020) Genome-Wide Analysis, Characterization, and Expression Profile of the Basic Leucine Zipper Transcription Factor Family in Pineapple. International Journal of Genomics. doi.org/10.1155/2020/3165958
57. Jin X, Hou Z, Zhao L, Liu L, Priyadarshani SVGN,Wang L, Huang Y, Chen F, QinY*. (2020) Genome-Wide Identification and Evaluation of New Reference Genes in Pineapple (Ananas comosus L.) during Stamen and Ovule Development. Tropical Plant Biology. 13, 371–381.
58. Cao S, He S, Lv H, Zhang J, Aslam M, Cheng H, Hu A, Cao G, Zhang X, Yu Y*, QinY*. (2020) Genome-Wide Analysis of the Cryptochrome Gene Family in Plants. Tropical Plant Biology.https://doi.org/10.1007/s12042-019-09249-9
2019
59. CaiH, ZhangM, ChaiM, HeQ, HuangX, ZhaoL, QinY*. (2019) Epigenetic Regulation of Anthocyanin Biosynthesis by an Antagonistic Interaction between H2A.Z and H3K4me3. New Phytologist.221(1):295-308. (IF=8.5, 一区)
60. Cheng Y, Yang P, Zhao L, Priyadarshani SVGN, Zhou Q, Li Z, Li W, Xiong J, Lin Z, Li L, Huang X, Liu J, Aslam M, Zhao H, Li G, Ma J, Li L, Qin Y*. (2019) Studies on genome size estimation, chromosome number, gametophyte development and plant morphology of salt-tolerant halophyte Suaeda salsa. BMC Plant Biology. 19: 473-485 (IF=3.670，二区)
61. Aslam M*, Fakher B, Anandhan S, Jakada B, Cao S, QinY*. (2019) SWR1 Chromatin Remodeling Complex: A Key Transcriptional Regulator in Plants. Cells. 8, 1621; doi:10.3390/cells8121621 (IF=5.656，二区)
62. Li Z, Li G, Cai M, Priyadarshani SVGN, Aslam M, Zhou Q, Huang X, Wang X, Liu Y, QinY*. (2019) Genome-Wide Analysis of the YABBY Transcription Factor Family in Pineapple and Functional Identification of AcYABBY4 Involvement in Salt Stress. International Journal of Molecular Sciences.20, 5863; doi:10.3390/ijms20235863 (IF=4.183，三区)
63. Priyadarshani SVGN, Cai H, Zhou Q, Liu Y, Cheng Y, Xiong J, Patson DL, Cao S, Zhao H, Qin Y*. (2019) An Efficient Agrobacterium Mediated Transformation of Pineapple with GFP-Tagged Protein Allows Easy, Non-Destructive Screening of Transgenic Pineapple Plants. Biomolecules.9, 617. doi: 10.3390/biom9100617. (IF=4.694)
64. Aslam M*, Fakher B, Jakada B, Zhao L, CaoS, Cheng Y, QinY*. (2019) Genome-Wide Identification and Expression Profiling of CBL-CIPK Gene Family in Pineapple (Ananas comosus) and the Role of AcCBL1 in Abiotic and Biotic Stress Response. Biomolecules. 9, 293; doi:10.3390/biom9070293
65. Jakada B, Aslam M*, Fakher B, Greaves J, Li Z, Li W, Lai L, Ayoade O, Cheng Y, CaoS, Li G, Hu J， QinY*. (2019) Identification of SWI2/SNF2-Related 1 Chromatin Remodeling Complex (SWR1-C) Subunits in Pineapple and the Role of Pineapple SWR1 COMPLEX 6 (AcSWC6) in Biotic and Abiotic Stress Response. Biomolecules. 9,364; doi:10.3390/biom9080364 (IF=4.694)
66. Bai Y, Dai X, Li Y, Wang L, Li W, Liu Y, Cheng Y, QinY*. (2019) Identification and characterization of pineapple leaf lncRNAs in crassulacean acid metabolism (CAM) photosynthesis pathway. Scientific Reports. 9:6658-6669
67. Aslam M, Fakher B, Anandhan S, Pande V, Ahmed Z, QinY*. (2019) Ectopic Expression of Cold Responsive LlaCIPK Gene Enhances Cold Stress Tolerance in Nicotiana tabacum. Genes.10, 446; doi:10.3390/genes10060446 (IF=3.331，三区)
68. Cao S, Cheng H, Zhang J, Aslam M, Yan M, Hu A, Lin L, Ojolo S, Zhao H, Priyadarshani S, Yu Y*, Cao G*, Qin Y*. (2019) Genome-wide identification, expression pattern analysis and evolution of the Ces/Csl gene superfamily in Pineapple (Ananas comosus). Plants. 8, 275; doi:10.3390/plants8080275 (IF=2.632)
69. He Q, Liu Y, Zhang M, Bai M, Priyadarshani, S V G N, Chai M, Chen F, Huang Y, Liu L, Cai H *, Qin Y*. (2019). Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Pineapple. Tropical Plant Biology. https://doi.org/10.1007/s12042-019-09233-3 (IF=1.686，四区)
70. Cai H, Zhang M, Liu Y, He Q, Chai M, Liu L, Chen F, Huang Y, Yan M, Zhao H, J.-M. Hu, QinY*. (2019) Genome-wide classification and evolutionary and functional analyses of the VQ family. Tropical Plant Biology. https://doi.org/10.1007/s12042-019-09224-4
71. Li Z, Su Z, QinY*. (2019) Genome-wide identification, Characterization of RDR genes and their expression analysis during reproductive development and stress in Pineapple. Tropical Plant Biology. DOI: 10.1007/s12042-019-09241-3
72. Chen H, Hu B, Zhao L, Shi D, She Z, Huang X, Priyadarshani S, Niu X*, Qin Y*. (2019) Differential Expression Analysis of Reference Genes in Pineapple (Ananas comosus L.) during Reproductive Development and Response to Abiotic Stress, Hormonal Stimuli. Tropical Plant Biology. https://doi.org/10.1007/s12042-019-09218-2
2014-2018
73. ZhaoL, CaiH, SuZ, WangL, HuangX, ZhangM, ChenP, DaiX, ZhaoH, PalaniveluR, ChenX*, Qin Y*. (2018) KLU Suppresses Megasporocyte Cell Fate through SWR1-Mediated Activation of WRKY28 Expression in Arabidopsis. Proceedings of the National Academy of Sciences.115(3): 526-535. (IF=11.2)
74. Priyadarshani S, Hu B, Li W, Ali H, Jia H, Zhao L, Ojolo S, Azam S, Xiong J, Yan M, Rahman Z, Wu Q*, Qin Y*. (2018) Simple protoplast isolation system for gene expression and protein interaction studies in pineapple (Ananas comosus L.). Plant Methods. 14: 95-107(IF=4.3)
75. Ojolo S, Cao S, Priyadarshani S, Li W, Yan M, Zhao H, Qin Y*. (2018) Plant growth and development regulation: A review from chromatin remodeling perspective. Frontiers in Plant Science. 9:1232-1245 (IF=3.7)
76. Zhang M, Liu Y, Shi H, Guo M, Chai M, He Q, Yan M, Cao D, Zhao L, Cai H*, Qin Y*. (2018) Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family. BMC Genomics19:159-173. (IF=3.7，二区)
77. Li W, Yan M, Hu B, Priyadarshani S, Hou Z, Ojolo S, Xiong J, Zhao H, Qin Y*. (2018) Characterization and the Expression Analysis of Nitrate Transporter (NRT) Gene Family in Pineapple. Tropical Plant Biology. https://doi.org/10.1007/s12042-018-9209-z (IF=1.4)
78. Azam S, Liu Y, Rahman Z, AliH, Qin Y*. (2018) Identification, characterization and expression profiles of Dof transcription factors in pineapple (Ananas comosus L). Tropical Plant Biology. https://doi.org/10.1007/s12042-018-9200-8 (IF=1.4)
79. Su Z, Zhao L, Zhao Y, Li S, Won S, Cai H, Wang L, Li Z, Chen P, Qin Y*, Chen X*. (2017) The THO complex non-cell autonomously represses female germline specification through the TAS3-ARF3module. Current Biology27(11):1597-1609. (IF=9.6)
80. Dai X, Bai Y, Zhao L, Dou X, Liu Y, Wang L, Li Y, Li W, Hui Y, Huang X, Wang Z*,Qin Y*. (2017) H2A.Z represses gene expression by modulating promoter nucleosome structure and enhancer histone modifications in Arabidopsis.Molecular Plant. 10: 1274-1292. (IF=9.3，被评为年度12篇最佳论文之一)
81. Cai H, Zhao L, Wang L, Zhang M, Su Z, Cheng Y, Zhao H, Qin Y*. (2017) ERECTA signaling controls Arabidopsis inflorescence architecture through chromatin-mediated activation of PRE1 expression. New Phytologist214(4):1579-1596 (IF=7.3)
82. ChenP, Li Y, ZhaoL, Hou Z, Yan M, Hu B, Liu Y, AzamS, Zhang Z, RahmanZ, Liu L, Qin Y*. (2017) Genome-wide identification and expression profiling of ATP-binding cassette (ABC) transporter gene family in pineapple (Ananas comosus (L.) Merr.) reveal the role of AcABCG38 in pollen development. Frontiers in Plant Science. 8:2150-2164. (IF=4.3)
83. AliH, Liu Y, AzamS, RahmanZ, PriyadarshaniS, Li W, HuangX, HuB, XiongJ, AliU, Qin Y*. (2017)Genomic survey, characterization and expression profile analysis of the SBP genes in pineapple (Ananas comosus L.). International Journal of Genomics. Article ID1032846, doi:10.1155/2017/1032846. (IF=2.6)
84. Rahman Z, Azam S, Liu Y, Yan C, Ali H, Zhao L,Chen P, Li Y, Priyadarshani S, Qin Y*. (2017) Expression profiles of Wuschel-Related Homeobox gene family in pineapple (Ananas comosus L). Tropical Plant Biology. 10:204-215 (IF=1.4)
85. Su Z, Wang L, Li W, Zhao L, Huang X, Azam S, Qin Y*. (2017)Genome-Wide Identification of Auxin Response Factor (ARF) Genes Family and its Tissue-Specific Prominent Expression in Pineapple (Ananas comosus). Tropical Plant Biology. 10(2-3):86-96(封面论文, IF=1.4)
86.王路路, 秦源*. (2017)植物雌配子体发育的分子调控. 生命科学29(3):310-318. （核心期刊CSCD-C）
87. Zhao L, He J, Cai H, Lin H, Liu R, Yang Z, Qin Y*. (2014) Comparative expression profiling reveals novel gene functions in female meiosis and gametophyte development in Arabidopsis. Plant Journal.80(4):615-28. (IF=6. 8)
88.常小艳, 赵丽华, 付凤玲*, 秦源*. (2014) 拟南芥温度诱导脂质运载蛋白TIL1参与雌配子体发育. 植物生理学报, 50 (3): 253~262 （封面论文，权威期刊CSCD-C）
第一作者论文
89. Qin Y, Zhao L, Skaggs M, Andreuzza S, Tsukamoto T, Panoli A, Wallace K, Smith S, Siddiqi I, Yang Z, Yadegari R*and Palanivelu R*. (2014) ACTIN-RELATED PROTEIN6 Regulates Female Meiosis By Modulating Meiotic Gene Expression in Arabidopsis. Plant Cell. 26:1612-1628. (IF=9.25)
90. Yuan Qinand Juan Dong*. (2015) Focusing on the focus: what else beyond the master switches for polar cell growth? Molecular Plant. 8: 582–594 (IF=6.6)
91. Qin Y,Leydon AR, Manziello A, Pandey R, Mount D, Denic S, Vasic B, Johnson MA and Palanivelu R*. (2009). Penetration of the stigma and style elicits a novel transcriptome in pollen tubes identifying genes critical for growth in a pistil. PLoS Genetics, 5 (8): e1000621.doi:10.1371/journal.pgen.1000621. (封面论文) (IF= 8.5) 他引257
92. Yuan Qin, Wysocki Jr RJ, Somogyi A, Feinstein Y, Franco JY, Tsukamoto T, Dunatunga D, Levy C, Smith S, Simpson R, Gang D, Johnson MA and Ravishankar Palanivelu*. (2011) Sulfinylated Azadecalins act as functional mimics of the pollen germination stimulant in Arabidopsis pistils. Plant Journal68 (5) 800-815.(IF=6. 8)
93. Yuan Qin, Zhenbiao Yang*. (2011) Rapid tip growth: Insights from pollen tubes. Seminars in Cell and Developmental Biology22(8):816-24. (IF= 6.2) 他引105
94. Yuan Qin and Jie Zhao* (2006). Localization of arabinogalactan-proteins in egg cells, zygotes and two-celled proembryos and effects of β-D-glucosyl Yariv reagent on egg cell fertilization and zygote division in Nicotiana tabacum L. Journal of experimental botany57(9): 2061-74. (IF= 5.2)
95. Yuan Qin, Ramin Yadegari, and Ravishankar Palanivelu*. (2015) ACTIN-RELATED PROTEIN 6 regulates DISRUPTED MEIOTIC cDNA 1 gene expression in Arabidopsis thaliana ovules. Molecular Reproduction and Development.82 (7-8): 499 (IF=2.5)
96. Yuan Qin and Jie Zhao* (2007). Localization of arabinogalactan-proteins in different stages of embryos and their role in cotyledon formation of Nicotiana tabacum L. Sexual Plant Reproduction20(4): 213 – 224. (IF= 2.07)
97. Yuan Qin, Dan Chen, Jie Zhao* (2007). Localization of arabinogalactan proteins in anther, pollen, and pollen tube of Nicotiana tabacum L. Protoplasma231(1-2):43-53. (IF= 2.85)
98. 秦源，陈丹，赵洁（2006）。烟草柱头和花柱组织中阿拉伯半乳糖蛋白的定位。植物生理与分子生物学学报。32(3): 307-14.
99. Yuan Qin, Jun Yang, Jie Zhao (2005). Calcium changes and the response to methyl jasmonate in rice lodicules during anthesis. Protoplasma 225(1-2): 103–112. (IF= 2.855)
100. 秦源，赵洁（2004）。阿拉伯半乳糖蛋白在被子植物有性生殖过程中的作用。植物生理与分子生物学学报。30(4): 371-378.
非通讯非第一作者论文
101. Zhu W, Qi J, Chen J, Ma S, Liu K, Su H, Chai M, Huang Y, Xi X, Cao Z, Qin Y, Cai H*. (2023) Identification of GA2ox Family Genes and Expression Analysis under Gibberellin Treatment in Pineapple (Ananas comosus (L.) Merr.). Plants. 12(14):2673. https://doi.org/10.3390/plants12142673
102. Huang Y, Xi X, Chai M, Ma S, Su H, Liu K, Wang F, Zhu W, Liu Y, Qin Y, Cai H*. (2023) Chromatin Remodeling Complex SWR1 Regulates Root Development by Affecting the Accumulation of Reactive Oxygen Species (ROS). Plants (Basel).12(4):940. doi: 10.3390/plants12040940.
103. Chen B, Dang X, Bai W, Liu M, Li Y, Zhu L, Yang Y, Yu P, Ren H, Huang D, Pan X, Wang H, Qin Y, Feng S, Wang Q, Lin D.(2022) The IPGA1-ANGUSTIFOLIA module regulates microtubule organisation and pavement cell shape in Arabidopsis. New Phytol.2022 Aug 17. doi: 10.1111/nph.18433.
104. 安昌;陆琳;沈梦千;陈盛圳;叶康卓;秦源;郑平．(2023)植物bHLH基因家族研究进展及在药用植物中的应用前景. 生物技术通报
105.李俊璋，秦源，肖强，安昌，廖静怡，郑平．(2022)景天酸代谢植物分子生物学研究进展及应用潜力．园艺学报. https://doi.org/10.16420/j.issn.0513-353x.2021-0835
106.黄幼梅, 柴梦楠, 席鑫鹏, 朱文辉, 齐金岗, 秦源, 蔡汉阳. (2022) 拟南芥EFP／EFPL基因对核盘菌抗性的功能分析. 英国威廉希尔公司学报（自然科学版）. 51:4
107. Huang Y, Chen F, Chai M, Xi X, Zhu W, Qi J, Liu K, Ma S, Su H, Tian Y, Zhang H, Qin Y, Cai H*. Ectopic Overexpression of Pineapple Transcription Factor AcWRKY31 Reduces Drought and Salt Tolerance in Rice and Arabidopsis. International Journal of Molecular Sciences, 2022, 23(11):6269. doi: 10.3390/ijms23116269. (IF=6.208, 二区)
108. Liang J, Hou Z, Liao J, Qin Y, Wang L, Wang X, Su W, Cai Z, Fang Y, Aslam M, Cheng Y, Zheng P*. (2022) Genome-Wide Identification and Expression Analysis of LBD Transcription Factor Genes in Passion Fruit (Passiflora edulis). International Journal of Molecular Sciences, 2022 Apr 24;23(9):4700. doi: 10.3390/ijms23094700. (IF=6.208, 二区)
109. Zheng P, Sun H, Liu J, Lin J, Zhang X, Qin Y, Zhang W, Xu X, Deng X, Yang D, Wang M, Zhang Y, Song H, Huang Y, Orozco-Obando W, Ming R*, Yang M*. Comparative analyses of American and Asian lotus genomes reveal insights into petal color, carpel thermogenesis and domestication. The Plant Journal. 2022 Jun;110(5):1498-1515. doi: 10.1111/tpj.15753.(IF=7.091, 一区)
110. Liu L, Chai M, Huang Y, Qi J, Zhu W, Xi X, Chen F, Qin Y, and Cai H* (2021) SDG2 regulates Arabidopsis inflorescence architecture through SWR1-ERECTA signaling pathway. IScience, 24:103236 (IF=4.4522, 二区)
111. Zhou X, Lu J, Zhang Y, Guo J, Lin W, Van Norman JM, Qin Y, Zhu X, Yang Z*(2021). Membrane receptor-mediated mechano-transduction maintains cell integrity during pollen tube growth within the pistil. Developmental Cell, 56(7):1030-1042.
112.周巧, 罗甜甜,李泽云,赵合明，秦源，程焱.(2020). 碱蓬枝条生根条件的优化.亚热带农业研究.16（4）：257-261.
113. Dang X, Chen B, Liu F, Ren H, Liu X, Zhou J, Qin Y, Lin D*(2020). Auxin Signaling-Mediated Apoplastic pH Modification Functions in Petal Conical Cell Shaping. Cell Reports. 30(11):3904-3916
114. Zhang L*, Chen F, Zhang X, Li Z, Zhao Y, Lohaus R, Chang X, Dong W, Ho S, Liu X, Song A, Chen J, Guo W, Wang Z, Zhuang Y, Wang H, Chen X, Hu J, Liu Y, Qin Y, Wang K, Dong S, Liu Y, Zhang S, Yu X, Wu Q, Wang L, Yan X, Jiao Y, Kong H, Zhou X, Yu C, Chen Y, Li F, Wang J, Chen W, Chen X, Jia Q, Zhang C, Jiang Y, Zhang W, Liu G, Fu J, Chen F, Ma H, Peer Y, Tang H. (2020) The water lily genome and the early evolution of flowering plants. Nature. 577, pages79–84
115. Chen LY, VanBuren R, Paris M, Zhou H, Zhang X, Wai CM, Yan H, Chen S, Alonge M, Ramakrishnan S, Liao Z, Liu J, Lin J, Yue J, Fatima M, Lin Z, Zhang J, Huang L, Wang H, Hwa TY, Kao SM, Choi JY, Sharma A, Song J, Wang L, Yim WC, Cushman JC, Paull RE, Matsumoto T, Qin Y, Wu Q, Wang J, Yu Q, Wu J, Zhang S, Boches P, Tung CW, Wang ML, Coppens d'Eeckenbrugge G, Sanewski GM, Purugganan MD, Schatz MC, Bennetzen JL, Lexer C, Ming R*.(2019) The bracteatus pineapple genome and domestication of clonally propagated crops. Nature Genetics51(10):1549-1558.
116. Yang Y, Chen B, Dang X, Zhu L, Rao j, Ren H, Lin C, Qin Y, Lin D*(2019). Arabidopsis IPGA1 is a microtubule-associated protein essential for cell expansion during petal morphogenesis. Journal of Experimental Botany.70(19)，5231-5243.
117. Hui Li, Nan Luo, Weidong Wang, Zengyu Liu, Jisheng Chen, Liangtao Zhao, Li Tan, Chunyan Wang, Yuan Qin, Chao Li, Tongda Xu, and Zhenbiao Yang*(2018). The REN4 rheostat dynamically coordinates the apical and lateral domains of Arabidopsis pollen tubes. Nature Communications. 9(1): 2573 (IF=12.3)
118. Cao L, Wang S, VenglatP, ZhaoL, Cheng Y, Ye S, Qin Y, DatlaR, ZhouY*, Wang H*. (2018). Arabidopsis ICK/KRP cyclin-dependent kinase inhibitors function to ensure the formation of one megaspore mother cell and one functional megaspore per ovule. PLoS Genetics14(3): e100723 (IF= 5.5)
119. Fei Chen, Yue Hu, Alessandro Vannozzi, Kangcheng Wu, Hanyang Cai, Yuan Qin, Alison Mullis, Zhenguo Lin, Liangsheng Zhang (2018). The WRKY Transcription Factor Family in Model Plants and Crops. Critical Reviews in Plant Sciences, DOI:10.1080/07352689.2018. 1441103 (IF=6.1)
120. Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, Ye Z, Miao C, Lin Z, Wang H, Zhou H, Yim WC, Priest HD, Zheng C, Woodhouse M, Edger PP, Guyot R, Guo HB, Guo H, Zheng G, Singh R, Sharma A, Min X, Zheng Y, Lee H, Gurtowski J, Sedlazeck FJ, Harkess A, McKain MR, Liao Z, Fang J, Liu J, Zhang X, Zhang Q, Hu W, Qin Y, Wang K, Chen LY, Shirley N, Lin YR, Liu LY, Hernandez AG, Wright CL, Bulone V, Tuskan GA, Heath K, Zee F, Moore PH, Sunkar R, Leebens-Mack JH, Mockler T, Bennetzen JL, Freeling M, Sankoff D, Paterson AH, Zhu X, Yang X, Smith JA, Cushman JC, Paull RE, Yu Q. (2015) The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47(12):1435-42. (IF=29)
121. Leydon, A. R., Tsukamoto, T., Dunatunga, D., Qin, Y., Johnson, M. A., and Palanivelu, R*. (2015). Pollen tube discharge completes the process of synergid degeneration that is initiated by pollen tube – synergid interaction in Arabidopsis. Plant Physiology169: 485-496. (IF=6.28)
122. Yetisen, A.K., Jiang, L., Cooper, J.R., Qin, Y., Palanivelu, R. & and Zohar, Y. (2011) A microsystem-based assay for studying pollen tube guidance in plant reproduction. Journal of Micromechanics and Microengineering21: 054018.(IF=1.79)
123. Tatsuya Tsukamoto, Yuan Qin, Yiding Huang, Damayanthi Dunatunga and Ravishankar Palanivelu. (2010) A role for LORELEI, a putative glycosylphosphatidylinositol-anchored protein, in Arabidopsis thaliana double fertilization and early seed development. Plant Journal62(4):571-88. (IF=5.468)
124. Juanzi Wu, Yuan Qin, Jie Zhao* (2008). Pollen tube growth is affected by exogenous hormones and correlated with hormone changes in styles in Torenia fournieri L. Plant Growth Regulation55(2):137-148.(IF=2.57)
125. Ying Hu, Yuan Qin, Jie Zhao (2006). Localization of arabinogalactan-proteins epitope and the effects of Yariv phonylglycoside during zygotic embryo development of Arabidopsis thaliana. Protoplasma 229(1): 21-31. (IF=2.343)
126.赵振东，秦源，吴娟子，赵洁（2006）。在烟草和蓝猪耳花粉萌发及花粉管生长中阿拉伯半乳糖蛋白的作用。武汉植物学研究。24(5): 397-402.
参编书籍：
1. 《植物生理与分子生物学》（第四版）第二篇，第八章 细胞极性; 第十章 植物内膜系统的发育及运输 菅新宇，秦源，杨贞标； 李晖，秦源，杨贞标。高等教育出版社，2012年6月印刷。ISBN 978-7-04-035155-2
2. 中国科学技术协会主编 《2012-2013植物生物学学科发展报告》 综合报告 四、植物生物学科发展趋势及展望 杨贞标 秦源。 中国科学技术出版社， 2014年4月印刷。ISBN 978-7-5046-6549-2/Q.181
3. 《Genetics and Genomics of Pineapple》, Chapter 2, Biology of the Pineapple Plant; Chapter 4, Genetic Diversity of Pineapple, Cheng Yan, Duane Bartholomew, Heming Zhao and Yuan Qin. Springer September, 2018. ISBN 978-3-030-00613-6
学术兼职：
中国植物学会第十六届理事会植物细胞生物学专业委员会委员（2018.12-2023.12）
福建省遗传学会青年委员会主任（2018.12-2023.12）
福建省第十届植物学会理事会理事（2021.11-2026.11）
《热带生物学报》副主编 (中国核心期刊，2020.11-2024.11)
《亚热带植物科学》编委（中国核心期刊，2020.8-2024.7）
《Tropical Plants》副主编 （SCI，2022.1-2024.12）
《Communications Biology》编委（SCI，2019.8-2023.7）
《Physiologia Plantarum》编委 （SCI，2022.7-2027.6）
《Tropical Plant Biology 》编委 （SCI，2019.3-2023.2）
社会职务：
第十四届全国人大代表（2023.1-2028.1）
民革第十四届中央委员会委员（2022.11-2027.11）
民革福建省第十四届委员会副主委（2022.6-2027.6）
福州市第十六届人大常委会农村经济工作委员会委员（2022.4-2027.4）
福州市第十五届人大代表（2017.3-2022.3）
福州市第十五届人大常委会农村经济工作委员会委员（2017.3-2022.3）
资政报告：
陈聪文、王斌、秦源、于元隆，提速我省科技创新中心建设，被中共福建省委党校、福建行政学与《决策参考》第四期（2022年3月29日）采用。
获得奖励：
2011年 入选中国科学院青年创新促进会
2014年 入选福建省高等学校“新世纪优秀人才”支持计划 2014年 福建省教育厅“闽江学者奖励计划”特聘教授
2014年 入选英国威廉希尔公司“金山学者”特聘教授
2015年 获得福建省委省政府第十二届福建青年五四奖章
2016年 入选福建省引进高层次人才（国内C类）
2016年 获福建运盛青年科技奖
2016年 福建留学人员先进个人
2016年 获英国威廉希尔公司严家显最高奖教金
2017年 获英国威廉希尔公司2011-2016年度科技创新工作先进个人
2017年 获英国皇家学会牛顿高级学者奖学金
2017年 入选福建省第五批创业创新高层次人才“百人计划”
2017年 获福建青年科技奖
2017年 入选福建省高校青年拔尖人才计划
2019年 入选广西壮族自治区特聘专家
2021年 入选福建省引进高层次B类人才
2021年 入选福建省“向上向善育人工程基金”奖教金
2021年 获得2020年度福建省自然科学奖二等奖（第1完成人）
2021年 获得全国博士后创新创业大赛铜奖
2022年 福建省教学成果二等奖（排名第3）
2023年 福建省三八红旗手
2023年 福建省最美女科技工作者
获得专利：
Qin Y., Palanivelu R., Wysocki R.Y., Somogyi A., and Feinstein Y. Pollen tube stimulants from Arabidopsis pistils. U.S. patent (美国专利：US2011/0111959 A1) was awarded to the Board of Regents, University of Arizona (on March 5, 2013).
秦源，蔡汉阳，张曼，赵丽华，王路路。快速观察拟南芥胚珠形态及统计外珠被细胞数目的方法。发明专利，授权专利号ZL201710139085.5,授权公告号CN106950088B，授权公布日2019.06.04
秦源，周巧，尼罗莎，蔡汉阳，程瀚，魏雪，罗甜甜。菠萝转录因子AcWRKY28在植物抗盐上的应用。发明专利，授权专利号ZL202110036754.2,申请公布号CN112501185A，授权公布日2022.10.24
秦源，蔡汉阳，张曼，何晴，柴梦楠，赵丽华。一种菠萝AcWRKY28基因及其超表达载体的构建和应用。发明专利，申请公布号CN 108048470 A，申请公布日2018.05.18
秦源，赵丽华，蔡汉阳，侯志敏，张曼，陈票娟。一种菠萝染色体二级结构的样品制备方法。发明专利，申请公布号CN 108611345 A，申请公布日2018.10.02
赵丽华，秦源，侯志敏，刘丽萍，蔡汉阳，王路路。利用免疫组化法检测菠萝胚珠减数分裂蛋白分布的方法。发明专利，申请公布号CN 108318697 A，申请公布日2018.07.24
王翔宇，秦源，罗甜甜，袁洁瑜，刘燕辉，姚立昂，迟铭。一种采用EMS诱变创制观赏凤梨新品种的方法。发明专利，申请公布号CN 114902961 A，申请公布日2022.08.16
王小媚 蔡昭艳 秦源 潘瑞立 苏伟强 陆宇明 郑平 程焱 白扬 董龙 王路路胡泊 邱文武 黄丽萍 廖原 施平丽 方位宽 黄章保 任惠 刘业强 黄辉晔，一种百香果三线式架式兜网采收方法，申请公布号CN 114788482 A，申请公布日2022.07.26
程焱 秦源 林志斌 刘金典 熊俊杰 杨攀，一个大孢子母细胞特异诱导表达系统，申请公布号 CN 113881696 A ，申请公布日2022.01.4
程焱 秦源 杨攀 熊俊杰 林志斌，一种大孢子母细胞外围细胞特异性诱导表达系统，申请公布号CN 114085864 A，申请公布日2022.02.25
程焱 秦源 杨攀 叶康卓 林志斌，一种拟南芥高效遗传转化的方法，请公布号CN 113684224 A，申请公布日2021.11.23
秦源 程焱 杨攀 熊俊杰，一种观察碱蓬胚珠形态和发育过程的方法，公布号 CN 113834712 A ，申请公布日2021.12.24
地方标准：
2020.7.5广西壮族自治区地方标准（登记号202127651）——菠萝产期调控生产技术规程（排名第5）
2021.11.22广西壮族自治区地方标准（登记号202130458）——百香果无病毒健康种苗栽培技术规程（排名第3）
受邀大会报告：
2010.9 参加在武夷山召开的第八届国际植物前沿会议：细胞和信号，作题为“Pistil signals potentiate pollen tubes prior to fertilization”的学术报告。
2011.6参加在苏州召开的冷泉港“植物细胞&发育生物学”亚洲会议，作题为“Actin related protein 6 (ARP6) plays a critical role in meiosis during production of female gametes via regulation of AtDMC1 expression in Arabidopsis thaliana”的学术报告。
2012.10参加在上海召开的花粉生物学国际前沿研讨会，作题为“Chemical-sensitized functional genomics analysis of pollen tube polar growth in Arabodipsis”的学术报告。
2013.3 参加在上海召开的植物减数分裂国际研讨会，作题为“Chromatin remodeling complex SWR1 is important for female meiosis in Arabidopsis ”的学术报告。
2014.3 参加在英国威廉希尔公司召开国际生物科学研讨会，作题为“Pollen-pistil interaction and Chromatin remodeling complex SWR1 regulated megasporogenesis in Arabidopsis”的学术报告。(会议主持人)
2014.7 参加在内蒙古呼和浩特召开的第十一届全国植物结构与生殖生物学学术研讨会，作题为“染色质重塑复合物SWR1调控拟南芥雌配子体发育的分子机理研究”的大会报告。
2015.8 参加在英国威廉希尔公司召开的海峡两岸植物生物学夏令营及研讨会，作题为“The roles of chromatin remodeling on Arabidopsis ovule development”的学术报告。
2016.8 参加在西安召开的第十二届全国植物结构与生殖生物学学术研讨会，作题为“细胞色素P450 KLU与染色质重塑复合物SWR1协同调控拟南芥大孢子发生的机理研究”的大会报告。
2017.2 参加在日本岩手大学召开的第一届UGAS植物和食品科学创新研讨会，作题为“The molecular control of ovule development”的学术报告。
2017.5 参加在苏州召开的冷泉港“植物细胞&发育”亚洲会议，作题为“KLU suppresses megasporocyte cell fate through SWR1-mediated activation of AKD28expression in Arabidopsis”的学术报告。
2017.7 参加在深圳召开的国际植物学大会会议，作题为“Chromatin remodeling complex SWR1 coordinates with cytochrome P450 KLU to regulate plant megasporocyte formation”的学术报告。
2018.3 参加在西双版纳召开的全国植物生物学女科学家会议，作题为“Chromatin remodelingregulate plant development”的学术报告。
2018.6参加在日本岐阜召开的国际植物有性生殖大会，作题为“Epigenetics and plant ovule development”的学术报告。
2018.10 参加在昆明召开的全国植物生物学学术年会，作题为“染色质重塑调控基因表达”的学术报告。
2018.10 参加在昆明召开的全国发育生物学大会，作题为“植物雌配子体发育机理研究”的学术报告。
2018.12 作为大会组委会主席组织了于2018年12月15-17日在英国威廉希尔公司召开的“第三届国际植物和农业科学研讨会”，来自6个国家30多个单位的320名老师和学生参加了会议。
2019.11 参加在福州召开的全国热带作物遗传育种学术研讨会，作题为“菠萝花器官及雌雄配子体发育的调控”的学术报告。
2021.4.14-17参加在重庆召开的中国细胞生物学学会2021年全国学术大会，作题为“Spatiotemporal control of miR398 biogenesis via chromatin remodeling and receptor kinase signaling ensures proper ovule development”的学术报告。
2021.7.23-25 参加在河南信阳召开的全国新时期高等学校植物学教学暨植物科学前沿进展学术研讨会，作题为“植物胚珠发育调控机理”的学术报告。
2021.11.2-5 参加在海南澄迈召开的2021年全国热带作物学术年会，作题为“菠萝成花及环境应答的分子调控”的学术报告，并作为“热带作物遗传育种”分会场主持人。
2021.12.5 参加在福建云霄召开的2021福建省植物学会会员代表大会暨学术研讨会，作题为“植物雌配子体发育调控”的学术报告。
2022.9.27-30 作为组织委员会委员承办了2022年中国植物生理与植物分子生物学全国学术年会，并担任青年学者论坛主持人，参会人员800人。
2022.11.11-13参加在湖北武汉召开的THE 4th WUHAN INTERNATIONAL SYMPOSIUM ON BIOLOGICAL SIGNAL TRANSDUCTION，作题为“The regulation of female gametophyte development”的学术报告并担任section chair。
